fix: restore all removed bundled skills + fix skills sync system

- Restored 21 skills removed in commits 757d012 and 740dd92: accelerate, audiocraft, code-review, faiss, flash-attention, gguf, grpo-rl-training, guidance, llava, nemo-curator, obliteratus, peft, pytorch-fsdp, pytorch-lightning, simpo, slime, stable-diffusion, tensorrt-llm, torchtitan, trl-fine-tuning, whisper - Rewrote sync_skills() with proper update semantics: * New skills (not in manifest): copied to user dir * Existing skills (in manifest + on disk): updated via hash comparison * User-deleted skills (in manifest, not on disk): respected, not re-added * Stale manifest entries (removed from bundled): cleaned from manifest - Added sync_skills() to CLI startup (cmd_chat) and gateway startup (start_gateway) — previously only ran during 'hermes update' - Updated cmd_update output to show new/updated/cleaned counts - Rewrote tests: 20 tests covering manifest CRUD, dir hashing, fresh install, user deletion respect, update detection, stale cleanup, and name collision handling 75 bundled skills total. 2002 tests pass.
2026-03-06 15:57:12 -08:00 · 2026-03-06 15:57:12 -08:00 · ab0f4126cf
commit ab0f4126cf
parent 68fbae5692
74 changed files with 27881 additions and 44 deletions
--- a/skills/mlops/nemo-curator/SKILL.md
+++ b/skills/mlops/nemo-curator/SKILL.md
@ -0,0 +1,386 @@
+---
+name: nemo-curator
+description: GPU-accelerated data curation for LLM training. Supports text/image/video/audio. Features fuzzy deduplication (16× faster), quality filtering (30+ heuristics), semantic deduplication, PII redaction, NSFW detection. Scales across GPUs with RAPIDS. Use for preparing high-quality training datasets, cleaning web data, or deduplicating large corpora.
+version: 1.0.0
+author: Orchestra Research
+license: MIT
+dependencies: [nemo-curator, cudf, dask, rapids]
+metadata:
+  hermes:
+    tags: [Data Processing, NeMo Curator, Data Curation, GPU Acceleration, Deduplication, Quality Filtering, NVIDIA, RAPIDS, PII Redaction, Multimodal, LLM Training Data]
+
+---
+
+# NeMo Curator - GPU-Accelerated Data Curation
+
+NVIDIA's toolkit for preparing high-quality training data for LLMs.
+
+## When to use NeMo Curator
+
+**Use NeMo Curator when:**
+- Preparing LLM training data from web scrapes (Common Crawl)
+- Need fast deduplication (16× faster than CPU)
+- Curating multi-modal datasets (text, images, video, audio)
+- Filtering low-quality or toxic content
+- Scaling data processing across GPU cluster
+
+**Performance**:
+- **16× faster** fuzzy deduplication (8TB RedPajama v2)
+- **40% lower TCO** vs CPU alternatives
+- **Near-linear scaling** across GPU nodes
+
+**Use alternatives instead**:
+- **datatrove**: CPU-based, open-source data processing
+- **dolma**: Allen AI's data toolkit
+- **Ray Data**: General ML data processing (no curation focus)
+
+## Quick start
+
+### Installation
+
+```bash
+# Text curation (CUDA 12)
+uv pip install "nemo-curator[text_cuda12]"
+
+# All modalities
+uv pip install "nemo-curator[all_cuda12]"
+
+# CPU-only (slower)
+uv pip install "nemo-curator[cpu]"
+```
+
+### Basic text curation pipeline
+
+```python
+from nemo_curator import ScoreFilter, Modify
+from nemo_curator.datasets import DocumentDataset
+import pandas as pd
+
+# Load data
+df = pd.DataFrame({"text": ["Good document", "Bad doc", "Excellent text"]})
+dataset = DocumentDataset(df)
+
+# Quality filtering
+def quality_score(doc):
+    return len(doc["text"].split()) > 5  # Filter short docs
+
+filtered = ScoreFilter(quality_score)(dataset)
+
+# Deduplication
+from nemo_curator.modules import ExactDuplicates
+deduped = ExactDuplicates()(filtered)
+
+# Save
+deduped.to_parquet("curated_data/")
+```
+
+## Data curation pipeline
+
+### Stage 1: Quality filtering
+
+```python
+from nemo_curator.filters import (
+    WordCountFilter,
+    RepeatedLinesFilter,
+    UrlRatioFilter,
+    NonAlphaNumericFilter
+)
+
+# Apply 30+ heuristic filters
+from nemo_curator import ScoreFilter
+
+# Word count filter
+dataset = dataset.filter(WordCountFilter(min_words=50, max_words=100000))
+
+# Remove repetitive content
+dataset = dataset.filter(RepeatedLinesFilter(max_repeated_line_fraction=0.3))
+
+# URL ratio filter
+dataset = dataset.filter(UrlRatioFilter(max_url_ratio=0.2))
+```
+
+### Stage 2: Deduplication
+
+**Exact deduplication**:
+```python
+from nemo_curator.modules import ExactDuplicates
+
+# Remove exact duplicates
+deduped = ExactDuplicates(id_field="id", text_field="text")(dataset)
+```
+
+**Fuzzy deduplication** (16× faster on GPU):
+```python
+from nemo_curator.modules import FuzzyDuplicates
+
+# MinHash + LSH deduplication
+fuzzy_dedup = FuzzyDuplicates(
+    id_field="id",
+    text_field="text",
+    num_hashes=260,      # MinHash parameters
+    num_buckets=20,
+    hash_method="md5"
+)
+
+deduped = fuzzy_dedup(dataset)
+```
+
+**Semantic deduplication**:
+```python
+from nemo_curator.modules import SemanticDuplicates
+
+# Embedding-based deduplication
+semantic_dedup = SemanticDuplicates(
+    id_field="id",
+    text_field="text",
+    embedding_model="sentence-transformers/all-MiniLM-L6-v2",
+    threshold=0.8  # Cosine similarity threshold
+)
+
+deduped = semantic_dedup(dataset)
+```
+
+### Stage 3: PII redaction
+
+```python
+from nemo_curator.modules import Modify
+from nemo_curator.modifiers import PIIRedactor
+
+# Redact personally identifiable information
+pii_redactor = PIIRedactor(
+    supported_entities=["EMAIL_ADDRESS", "PHONE_NUMBER", "PERSON", "LOCATION"],
+    anonymize_action="replace"  # or "redact"
+)
+
+redacted = Modify(pii_redactor)(dataset)
+```
+
+### Stage 4: Classifier filtering
+
+```python
+from nemo_curator.classifiers import QualityClassifier
+
+# Quality classification
+quality_clf = QualityClassifier(
+    model_path="nvidia/quality-classifier-deberta",
+    batch_size=256,
+    device="cuda"
+)
+
+# Filter low-quality documents
+high_quality = dataset.filter(lambda doc: quality_clf(doc["text"]) > 0.5)
+```
+
+## GPU acceleration
+
+### GPU vs CPU performance
+
+| Operation | CPU (16 cores) | GPU (A100) | Speedup |
+|-----------|----------------|------------|---------|
+| Fuzzy dedup (8TB) | 120 hours | 7.5 hours | 16× |
+| Exact dedup (1TB) | 8 hours | 0.5 hours | 16× |
+| Quality filtering | 2 hours | 0.2 hours | 10× |
+
+### Multi-GPU scaling
+
+```python
+from nemo_curator import get_client
+import dask_cuda
+
+# Initialize GPU cluster
+client = get_client(cluster_type="gpu", n_workers=8)
+
+# Process with 8 GPUs
+deduped = FuzzyDuplicates(...)(dataset)
+```
+
+## Multi-modal curation
+
+### Image curation
+
+```python
+from nemo_curator.image import (
+    AestheticFilter,
+    NSFWFilter,
+    CLIPEmbedder
+)
+
+# Aesthetic scoring
+aesthetic_filter = AestheticFilter(threshold=5.0)
+filtered_images = aesthetic_filter(image_dataset)
+
+# NSFW detection
+nsfw_filter = NSFWFilter(threshold=0.9)
+safe_images = nsfw_filter(filtered_images)
+
+# Generate CLIP embeddings
+clip_embedder = CLIPEmbedder(model="openai/clip-vit-base-patch32")
+image_embeddings = clip_embedder(safe_images)
+```
+
+### Video curation
+
+```python
+from nemo_curator.video import (
+    SceneDetector,
+    ClipExtractor,
+    InternVideo2Embedder
+)
+
+# Detect scenes
+scene_detector = SceneDetector(threshold=27.0)
+scenes = scene_detector(video_dataset)
+
+# Extract clips
+clip_extractor = ClipExtractor(min_duration=2.0, max_duration=10.0)
+clips = clip_extractor(scenes)
+
+# Generate embeddings
+video_embedder = InternVideo2Embedder()
+video_embeddings = video_embedder(clips)
+```
+
+### Audio curation
+
+```python
+from nemo_curator.audio import (
+    ASRInference,
+    WERFilter,
+    DurationFilter
+)
+
+# ASR transcription
+asr = ASRInference(model="nvidia/stt_en_fastconformer_hybrid_large_pc")
+transcribed = asr(audio_dataset)
+
+# Filter by WER (word error rate)
+wer_filter = WERFilter(max_wer=0.3)
+high_quality_audio = wer_filter(transcribed)
+
+# Duration filtering
+duration_filter = DurationFilter(min_duration=1.0, max_duration=30.0)
+filtered_audio = duration_filter(high_quality_audio)
+```
+
+## Common patterns
+
+### Web scrape curation (Common Crawl)
+
+```python
+from nemo_curator import ScoreFilter, Modify
+from nemo_curator.filters import *
+from nemo_curator.modules import *
+from nemo_curator.datasets import DocumentDataset
+
+# Load Common Crawl data
+dataset = DocumentDataset.read_parquet("common_crawl/*.parquet")
+
+# Pipeline
+pipeline = [
+    # 1. Quality filtering
+    WordCountFilter(min_words=100, max_words=50000),
+    RepeatedLinesFilter(max_repeated_line_fraction=0.2),
+    SymbolToWordRatioFilter(max_symbol_to_word_ratio=0.3),
+    UrlRatioFilter(max_url_ratio=0.3),
+
+    # 2. Language filtering
+    LanguageIdentificationFilter(target_languages=["en"]),
+
+    # 3. Deduplication
+    ExactDuplicates(id_field="id", text_field="text"),
+    FuzzyDuplicates(id_field="id", text_field="text", num_hashes=260),
+
+    # 4. PII redaction
+    PIIRedactor(),
+
+    # 5. NSFW filtering
+    NSFWClassifier(threshold=0.8)
+]
+
+# Execute
+for stage in pipeline:
+    dataset = stage(dataset)
+
+# Save
+dataset.to_parquet("curated_common_crawl/")
+```
+
+### Distributed processing
+
+```python
+from nemo_curator import get_client
+from dask_cuda import LocalCUDACluster
+
+# Multi-GPU cluster
+cluster = LocalCUDACluster(n_workers=8)
+client = get_client(cluster=cluster)
+
+# Process large dataset
+dataset = DocumentDataset.read_parquet("s3://large_dataset/*.parquet")
+deduped = FuzzyDuplicates(...)(dataset)
+
+# Cleanup
+client.close()
+cluster.close()
+```
+
+## Performance benchmarks
+
+### Fuzzy deduplication (8TB RedPajama v2)
+
+- **CPU (256 cores)**: 120 hours
+- **GPU (8× A100)**: 7.5 hours
+- **Speedup**: 16×
+
+### Exact deduplication (1TB)
+
+- **CPU (64 cores)**: 8 hours
+- **GPU (4× A100)**: 0.5 hours
+- **Speedup**: 16×
+
+### Quality filtering (100GB)
+
+- **CPU (32 cores)**: 2 hours
+- **GPU (2× A100)**: 0.2 hours
+- **Speedup**: 10×
+
+## Cost comparison
+
+**CPU-based curation** (AWS c5.18xlarge × 10):
+- Cost: $3.60/hour × 10 = $36/hour
+- Time for 8TB: 120 hours
+- **Total**: $4,320
+
+**GPU-based curation** (AWS p4d.24xlarge × 2):
+- Cost: $32.77/hour × 2 = $65.54/hour
+- Time for 8TB: 7.5 hours
+- **Total**: $491.55
+
+**Savings**: 89% reduction ($3,828 saved)
+
+## Supported data formats
+
+- **Input**: Parquet, JSONL, CSV
+- **Output**: Parquet (recommended), JSONL
+- **WebDataset**: TAR archives for multi-modal
+
+## Use cases
+
+**Production deployments**:
+- NVIDIA used NeMo Curator to prepare Nemotron-4 training data
+- Open-source datasets curated: RedPajama v2, The Pile
+
+## References
+
+- **[Filtering Guide](references/filtering.md)** - 30+ quality filters, heuristics
+- **[Deduplication Guide](references/deduplication.md)** - Exact, fuzzy, semantic methods
+
+## Resources
+
+- **GitHub**: https://github.com/NVIDIA/NeMo-Curator ⭐ 500+
+- **Docs**: https://docs.nvidia.com/nemo-framework/user-guide/latest/datacuration/
+- **Version**: 0.4.0+
+- **License**: Apache 2.0
+
+
+
--- a/skills/mlops/nemo-curator/references/deduplication.md
+++ b/skills/mlops/nemo-curator/references/deduplication.md
@ -0,0 +1,87 @@
+# Deduplication Guide
+
+Complete guide to exact, fuzzy, and semantic deduplication.
+
+## Exact deduplication
+
+Remove documents with identical content.
+
+```python
+from nemo_curator.modules import ExactDuplicates
+
+# Exact deduplication
+exact_dedup = ExactDuplicates(
+    id_field="id",
+    text_field="text",
+    hash_method="md5"  # or "sha256"
+)
+
+deduped = exact_dedup(dataset)
+```
+
+**Performance**: ~16× faster on GPU vs CPU
+
+## Fuzzy deduplication
+
+Remove near-duplicate documents using MinHash + LSH.
+
+```python
+from nemo_curator.modules import FuzzyDuplicates
+
+fuzzy_dedup = FuzzyDuplicates(
+    id_field="id",
+    text_field="text",
+    num_hashes=260,        # MinHash permutations (more = accurate)
+    num_buckets=20,        # LSH buckets (more = faster, less recall)
+    hash_method="md5",
+    jaccard_threshold=0.8  # Similarity threshold
+)
+
+deduped = fuzzy_dedup(dataset)
+```
+
+**Parameters**:
+- `num_hashes`: 128-512 (default 260)
+- `num_buckets`: 10-50 (default 20)
+- `jaccard_threshold`: 0.7-0.9 (default 0.8)
+
+**Performance**: 16× faster on 8TB dataset (120h → 7.5h)
+
+## Semantic deduplication
+
+Remove semantically similar documents using embeddings.
+
+```python
+from nemo_curator.modules import SemanticDuplicates
+
+semantic_dedup = SemanticDuplicates(
+    id_field="id",
+    text_field="text",
+    embedding_model="sentence-transformers/all-MiniLM-L6-v2",
+    embedding_batch_size=256,
+    threshold=0.85,  # Cosine similarity threshold
+    device="cuda"
+)
+
+deduped = semantic_dedup(dataset)
+```
+
+**Models**:
+- `all-MiniLM-L6-v2`: Fast, 384 dims
+- `all-mpnet-base-v2`: Better quality, 768 dims
+- Custom models supported
+
+## Comparison
+
+| Method | Speed | Recall | Use Case |
+|--------|-------|--------|----------|
+| Exact | Fastest | 100% | Exact matches only |
+| Fuzzy | Fast | ~95% | Near-duplicates (recommended) |
+| Semantic | Slow | ~90% | Paraphrases, rewrites |
+
+## Best practices
+
+1. **Start with exact dedup** - Remove obvious duplicates
+2. **Use fuzzy for large datasets** - Best speed/quality trade-off
+3. **Semantic for high-value data** - Expensive but thorough
+4. **GPU acceleration required** - 10-16× speedup
--- a/skills/mlops/nemo-curator/references/filtering.md
+++ b/skills/mlops/nemo-curator/references/filtering.md
@ -0,0 +1,102 @@
+# Quality Filtering Guide
+
+Complete guide to NeMo Curator's 30+ quality filters.
+
+## Text-based filters
+
+### Word count
+
+```python
+from nemo_curator.filters import WordCountFilter
+
+# Filter by word count
+dataset = dataset.filter(WordCountFilter(min_words=50, max_words=100000))
+```
+
+### Repeated content
+
+```python
+from nemo_curator.filters import RepeatedLinesFilter
+
+# Remove documents with >30% repeated lines
+dataset = dataset.filter(RepeatedLinesFilter(max_repeated_line_fraction=0.3))
+```
+
+### Symbol ratio
+
+```python
+from nemo_curator.filters import SymbolToWordRatioFilter
+
+# Remove documents with too many symbols
+dataset = dataset.filter(SymbolToWordRatioFilter(max_symbol_to_word_ratio=0.3))
+```
+
+### URL ratio
+
+```python
+from nemo_curator.filters import UrlRatioFilter
+
+# Remove documents with many URLs
+dataset = dataset.filter(UrlRatioFilter(max_url_ratio=0.2))
+```
+
+## Language filtering
+
+```python
+from nemo_curator.filters import LanguageIdentificationFilter
+
+# Keep only English documents
+dataset = dataset.filter(LanguageIdentificationFilter(target_languages=["en"]))
+
+# Multiple languages
+dataset = dataset.filter(LanguageIdentificationFilter(target_languages=["en", "es", "fr"]))
+```
+
+## Classifier-based filtering
+
+### Quality classifier
+
+```python
+from nemo_curator.classifiers import QualityClassifier
+
+quality_clf = QualityClassifier(
+    model_path="nvidia/quality-classifier-deberta",
+    batch_size=256,
+    device="cuda"
+)
+
+# Filter low-quality (threshold > 0.5 = high quality)
+dataset = dataset.filter(lambda doc: quality_clf(doc["text"]) > 0.5)
+```
+
+### NSFW classifier
+
+```python
+from nemo_curator.classifiers import NSFWClassifier
+
+nsfw_clf = NSFWClassifier(threshold=0.9, device="cuda")
+
+# Remove NSFW content
+dataset = dataset.filter(lambda doc: nsfw_clf(doc["text"]) < 0.9)
+```
+
+## Heuristic filters
+
+Full list of 30+ filters:
+- WordCountFilter
+- RepeatedLinesFilter
+- UrlRatioFilter
+- SymbolToWordRatioFilter
+- NonAlphaNumericFilter
+- BulletsFilter
+- WhiteSpaceFilter
+- ParenthesesFilter
+- LongWordFilter
+- And 20+ more...
+
+## Best practices
+
+1. **Apply cheap filters first** - Word count before GPU classifiers
+2. **Tune thresholds on sample** - Test on 10k docs before full run
+3. **Use GPU classifiers sparingly** - Expensive but effective
+4. **Chain filters efficiently** - Order by cost (cheap → expensive)